scikit-allel
Data structures
GenotypeArray
HaplotypeArray
AlleleCountsArray
VariantTable
FeatureTable
SortedIndex
UniqueIndex
SortedMultiIndex
Compressed arrays (bcolz)
GenotypeCArray
HaplotypeCArray
AlleleCountsCArray
VariantCTable
FeatureCTable
Utility functions
Statistics
Diversity & divergence
Pairwise distance
Hardy-Weinberg equilibrium
Window utilities
Plotting functions
Pairwise distance
scikit-allel
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allel.bcolz
allel.model
allel.plot
allel.stats
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v: v0.9.0
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