scikit-allel
Data structures
GenotypeArray
HaplotypeArray
AlleleCountsArray
VariantTable
FeatureTable
SortedIndex
UniqueIndex
SortedMultiIndex
Utility functions
Compressed arrays (bcolz)
GenotypeCArray
HaplotypeCArray
AlleleCountsCArray
VariantCTable
FeatureCTable
Utility functions
Statistics
Diversity & divergence
F-statistics
Hardy-Weinberg equilibrium
Linkage disequilibrium
Pairwise distance and ordination
Principal components analysis
Admixture tests
Window utilities
Preprocessing utilities
Plotting functions
Variant location
Pairwise distance
Linkage disequilibrium
Input/output utilities
Release notes
v0.14
v0.12
v0.11
v0.10
v0.9
v0.8
v0.7
v0.6
scikit-allel
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Statistics
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Statistics
ΒΆ
Statistical functions for use with variant call data.
Diversity & divergence
F-statistics
Hardy-Weinberg equilibrium
Linkage disequilibrium
Pairwise distance and ordination
Principal components analysis
Admixture tests
Window utilities
Preprocessing utilities
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v: v0.14.0
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