scikit-allel
  • Data structures
    • GenotypeArray
    • HaplotypeArray
    • AlleleCountsArray
    • VariantTable
    • FeatureTable
    • SortedIndex
    • UniqueIndex
    • SortedMultiIndex
    • Utility functions
  • Compressed arrays (bcolz)
    • GenotypeCArray
    • HaplotypeCArray
    • AlleleCountsCArray
    • VariantCTable
    • FeatureCTable
    • Utility functions
  • Statistics
    • Diversity & divergence
    • Pairwise distance
    • Hardy-Weinberg equilibrium
    • Linkage disequilibrium
    • Window utilities
  • Plotting functions
    • Variant location
    • Pairwise distance
    • Linkage disequilibrium
 
scikit-allel
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