scikit-allel
Data structures
GenotypeArray
HaplotypeArray
AlleleCountsArray
VariantTable
FeatureTable
SortedIndex
UniqueIndex
SortedMultiIndex
Utility functions
Compressed arrays (bcolz)
GenotypeCArray
HaplotypeCArray
AlleleCountsCArray
VariantCTable
FeatureCTable
Utility functions
Statistics
Diversity & divergence
Pairwise distance
Hardy-Weinberg equilibrium
Linkage disequilibrium
Window utilities
Plotting functions
Variant location
Pairwise distance
Linkage disequilibrium
scikit-allel
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Overview: module code
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All modules for which code is available
allel.bcolz
allel.model
allel.plot
allel.stats.distance
allel.stats.diversity
allel.stats.hw
allel.stats.ld
allel.stats.window
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v: v0.10.0
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