Plotting functions¶
Plotting functions for variant call data.
Pairwise distance¶
- allel.plot.pairwise_distance(dist, labels=None, colorbar=True, ax=None, imshow_kwargs=None)[source]¶
Plot a pairwise distance matrix.
Parameters: dist : array_like
The distance matrix in condensed form.
labels : sequence of strings, optional
Sample labels for the axes.
colorbar : bool, optional
If True, add a colorbar to the current figure.
ax : axes, optional
The axes on which to draw. If not provided, a new figure will be created.
imshow_kwargs : dict-like, optional
Additional keyword arguments passed through to matplotlib.pyplot.imshow().
Returns: ax : axes
The axes on which the plot was drawn